Members.
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Dirk Drasdo (Dr. habil.)

 Head of the Research & Directeur de Recherche at Institut National de Recherche en Informatique et en Automatique (INRIA)

  • Multi-scale analysis and modeling of multicellular systems
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Tim Johann (Dipl. Phys.) (Shared with HoehmeLab research group)

 Interdisciplinary Centre for Bioinformatics (IZBI)

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Johannes Neitsch (Dipl. Math.)

 PhD student

 Interdisciplinary Centre for Bioinformatics (IZBI)

  • Agent-based Modeling
  • Physical Modeling of Cells, Flux and Diffusion in Tissue
    • Adhesion; Proliferation; Micro Pipettes; Optical Stretcher
  • Flux and Diffusion in Tissue
  • Mass - Spring - Systems
  • Off-Lattice Simulation

 

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Dr. Paul Van Liedekerke

 PostDoc

 Institut National de Recherche en Informatique et en Automatique (INRIA)

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Yi Yin

 PostDoc

 Institut National de Recherche en Informatique et en Automatique (INRIA) 

  • Image processing and analysis.
  • Multi-scale image analysis in Lung tumor: histological image, DWI-MRI, DCE-MRI.

 

 

 

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Noemie Boissier

 PhD Student

MAMBA, Centre de recherche INRIA de Paris & Laboratoire Jacques Louis Lions,  UPMC

  • Blood flow in a liver lobule in healthy state and after partial hepatectomy
  • Convection of a substance in the liver micro-architecture
  • Spatial multi-scale model of drug toxicities (with Geraldine Cellière)

External members.

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Ahmed Mohammed Mohammed

 Leibniz Research Centre for Working Environment and Human Factors (IfADo)

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Alshaimaa Mamdouh Adawy

 Leibniz Research Centre for Working Environment and Human Factors (IfADo)

Internships.

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Anne-Celine Boulanger

 Institut National de Recherche en Informatique et en Automatique (INRIA)

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Emanuele Leoncini

 Institut National de Recherche en Informatique et en Automatique (INRIA)

Previous members.

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Adrian Friebel (Dipl. Inf.)

 PhD student

 Interdisciplinary Centre for Bioinformatics (IZBI)

  • Image/volume processing and analysis
  • Visualisation

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François Bertaux 

 PhD Student

INRIA

  • [Systems Biology] Dealing with non-genetic cell-to-cell variability: extending kinetic models with stochastic gene expression. Application to TRAIL-induced apoptosis to investigate fractional killing and reversible resistance.
  • [Systems Biology] Multi-scale modeling of TRAIL action on spheroids: disentangling the cell-intrinsic (noise in gene expression and signal transduction) and extrinsic (spatial gradients formed by limited drug penetration) contributions to heterogeneity in response.
  • [Synthetic Biology] Multi-scale modeling for the engineering of spatial systems (with MIT).
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Géraldine Cellière (Dipl. Bio) 

 PhD Student

 Institut National de Recherche en Informatique et en Automatique (INRIA)

  • compartment ODE-model of ammonia detoxification by the liver during drug-induced damage: parameter estimation, sensibility analysis, models comparison (AIC, BIC)
  • multi-scale model (agent-based cells + metabolism + transport/diffusion) of paracetamol toxicity in the liver
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Margriet Palm

 PostDoc

 Institut National de Recherche en Informatique et en Automatique (INRIA)

  • cell-based modeling of tumor invations using individual-based models;
  • multi-scale modeling of cell-ECM interactions.
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Stefan Hoehme (Dr. rer. nat.)

Research fellow

 Interdisciplinary Centre for Bioinformatics (IZBI)

  • Image/volume processing and analysis
  • Visualisation
  • Multi-scale modeling of biological tissues (current focus: liver)
  • Multicellular systems biology
  • Algorithm design

 

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 Ibrahim Cheddadi

 Institut National de Recherche en Informatique et en Automatique (INRIA)

  •    Multi-scale and hybrid modeling of cancer
          > continuum modeling of growing cell populations
          > comparison with agent-based models

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Nick Jagiella (Dr. rer. nat.) 

 PhD student

 Institut National de Recherche en Informatique et en Automatique (INRIA)

  • Agent-based modeling of multi-cellular systems in biotechnological applications
  • Cellular automaton models
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Chadha Chettaoui (Mathematician)

 Institut National de Recherche en Informatique et en Automatique (INRIA)

  • Physically-based modeling and analysis of animal tissue growth and morphogenesis
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William Weens

 Institut National de Recherche en Informatique et en Automatique (INRIA)

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Ignacio Ramis-Conde

 Institut National de Recherche en Informatique et en Automatique (INRIA)

  • Mathematical modelling of cancer cell invasion of tissue
 

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Axel Krinner (Dipl. Phys.)

 PhD student

 Interdisciplinary Centre for Bioinformatics (IZBI)

  • Off-lattice individual cell based models
  • Computational simulation of sorting and compression
  • Stem cells and cell differentiation